https://monahaboualezz.r-universe.devRecent package updates in monahaboualezzR-universehttps://github.com/monahaboualezz.pnghttps://monahaboualezz.r-universe.devThu, 05 Feb 2026 19:13:24 GMTaboualezz.monah@hsr.it (Monah Abou Alezz)A comprehensive suite of helper functions designed to facilitate the analysis of genomic annotations from the 'GENCODE' database <https://www.gencodegenes.org/>, supporting both human and mouse genomes. This toolkit enables users to extract, filter, and analyze a wide range of annotation features including genes, transcripts, exons, and introns across different 'GENCODE' releases. It provides functionality for cross-version comparisons, allowing researchers to systematically track annotation updates, structural changes, and feature-level differences between releases. In addition, the package can generate high-quality FASTA files containing donor and acceptor splice site motifs, which are formatted for direct input into the 'MaxEntScan' tool (Yeo and Burge, 2004 <doi:10.1089/1066527041410418>), enabling accurate calculation of splice site strength scores.https://github.com/r-universe/monahton/actions/runs/39589060070Thu, 05 Feb 2026 19:13:24 GMTGencoDymo21.0.4successhttps://monahton.r-universe.devhttps://github.com/monahton/GencoDymo2GencoDymo2_vignette.RmdGencoDymo2_vignette.htmlGencoDymo2: Comprehensive Analysis of GENCODE Annotations and Splice Site Motifs2025-04-28 13:42:202025-08-21 08:13:48aboualezz.monah@hsr.it (Monah Abou Alezz)The goal of NatChat is to provide fast, local-language-model-powered summaries of articles from the current issues of Nature journals, making cutting-edge science more accessible and digestible. The package includes functions to identify available journals, retrieve articles from the latest issues, construct prompts for summarization and generate natural-language summaries using large language models (LLMs) via the 'ollama' interface. Output can be formatted for use in markdown tables, reports, or summaries. This tool is particularly useful for researchers, educators, and clinicians who want to stay up to date with the latest literature across multiple disciplines.https://github.com/r-universe/monahton/actions/runs/37188837469Fri, 11 Jul 2025 12:52:10 GMTNatChat1.1.0successhttps://monahton.r-universe.devhttps://github.com/monahton/NatChat